GET sequence/proteome/:species

Dowbload whole proteome peptides sequence for a given speciess.

Parameters

Required

NameTypeDescriptionDefaultExample Values
species String Species name/alias - anopheles_gambiae

Optional

NameTypeDescriptionDefaultExample Values
callback String Name of the callback subroutine to be returned by the requested JSONP response. Required ONLY when using JSONP as the serialisation method. Please see the user guide. - randomlygeneratedname

Example Requests

/rest/sequence/proteome/anopheles_gambiae?content-type=text/x-fasta


use strict;
use warnings;

use HTTP::Tiny;

my $http = HTTP::Tiny->new();

my $server = 'https://www.vectorbase.org/rest';
my $ext = '/sequence/proteome/anopheles_gambiae?';
my $response = $http->get($server.$ext, {
  headers => { 'Content-type' => 'text/x-fasta' }
});

die "Failed!\n" unless $response->{success};


print "$response->{status} $response->{reason}\n";

import requests, sys

server = "https://www.vectorbase.org/rest"
ext = "/sequence/proteome/anopheles_gambiae?"

r = requests.get(server+ext, headers={ "Content-Type" : "text/x-fasta"})

if not r.ok:
  r.raise_for_status()
  sys.exit()


print r.text

import requests, sys

server = "https://www.vectorbase.org/rest"
ext = "/sequence/proteome/anopheles_gambiae?"

r = requests.get(server+ext, headers={ "Content-Type" : "text/x-fasta"})

if not r.ok:
  r.raise_for_status()
  sys.exit()


print r.text

require 'net/http'
require 'uri'

server='https://www.vectorbase.org/rest'
path = '/sequence/proteome/anopheles_gambiae?'

url = URI.parse(server)
http = Net::HTTP.new(url.host, url.port)

request = Net::HTTP::Get.new(path, {'Content-Type' => 'text/x-fasta'})

response = http.request(request)

if response.code != "200"
  puts "Invalid response: #{response.code}"
  puts response.body
  exit
end


puts response.body

import java.net.URL;
import java.net.URLConnection;
import java.net.HttpURLConnection;
import java.io.BufferedReader;
import java.io.InputStream;
import java.io.InputStreamReader;
import java.io.IOException;
import java.io.Reader;


public class EnsemblRest {

  public static void main(String[] args) throws Exception {
    String server = "https://www.vectorbase.org/rest";
    String ext = "/sequence/proteome/anopheles_gambiae?";
    URL url = new URL(server + ext);

    URLConnection connection = url.openConnection();
    HttpURLConnection httpConnection = (HttpURLConnection)connection;
    
    httpConnection.setRequestProperty("Content-Type", "text/x-fasta");
    

    InputStream response = connection.getInputStream();
    int responseCode = httpConnection.getResponseCode();

    if(responseCode != 200) {
      throw new RuntimeException("Response code was not 200. Detected response was "+responseCode);
    }

    String output;
    Reader reader = null;
    try {
      reader = new BufferedReader(new InputStreamReader(response, "UTF-8"));
      StringBuilder builder = new StringBuilder();
      char[] buffer = new char[8192];
      int read;
      while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
        builder.append(buffer, 0, read);
      }
      output = builder.toString();
    } 
    finally {
        if (reader != null) try {
          reader.close(); 
        } catch (IOException logOrIgnore) {
          logOrIgnore.printStackTrace();
        }
    }

    System.out.println(output);
  }
}

# Note: curl version 7.34.0 or above is required

curl 'https://www.vectorbase.org/rest/sequence/proteome/anopheles_gambiae?' -H 'Content-type:text/x-fasta'

wget -q --header='Content-type:text/x-fasta' 'https://www.vectorbase.org/rest/sequence/proteome/anopheles_gambiae?'  -O -

Resource Information

MethodsGET
Response formatsfasta
json
seqxml
text
yaml
jsonp
Slice length1e7